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Tools
» In silico PCR Amplification
In silico PCR Amplification
Running
in silico
PCR . . .
In silico
PCR may take a minute or two.
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Thank you for your patience.
In silico
PCR Amplification
Source code
Genome
Medicago sativa
L. (CADL)
Medicago truncatula
v4
Medicago truncatula
v3.5.5
Medicago truncatula
v3.0
Input
1
MSCWSNP0002 GAGCCACAATCACTCCTCTACC TCTCTATTCCTTCTTCCTCATCCA MSCWSNP0007 CCCACCCATTGTTCCTGA CCTTCTATGGAGGAAGTGATGC MSCWSNP0012 GCCCTGTTGTCTCCTCCATA CTCTTGCTAGGGACAAGCTGA MSCWSNP0018 CTTGGTCCTGTTTCTTCTCATTCT CAGCAAACCCGTAATTGATGA MSCWSNP0026 TCCAACTGACCCTCAACAGA CCAGAGGAGATTACAAAGGATGA MSCWSNP0032 CCAATGGGAAGAGTTACAACAAG CAACCAACAATTCAGAACACT MSCWSNP0033 TTGAGTAGCACAACCGAGGA TGCTGATGGAACTTATGCTGA MSCWSNP0042 TTGGGTCCTCTCTTGTGGAG TGACCACATCAGTTGGAAGC MSCWSNP0050 CAGAATGGAACTTGGAGTTGG CATCCATCGCATGACTTCTC
Tile Size
the size of match that triggers an alignment
Step Size
spacing between tiles
Max Amplicon Size
bp
Maximum size of PCR product
Minimum Perfect Match
bp
Minimum size of perfect match at 3' end of primer
Minimum Good Match
bp
Minimum size where there must be 2 matches for each mismatch