MSAD_210100.t1 (mRNA; Medicago sativa )

Overview
NameMSAD_210100.t1
Unique NameMSAD_210100.t1
TypemRNA
OrganismMedicago sativa (alfalfa)
Sequence length876
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MSAD_210100MSAD_210100Medicago sativagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210100.t1MSAD_210100.t1-proteinMedicago sativapolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210100.t1:exon:112MSAD_210100.t1:exon:112Medicago sativaexon
MSAD_210100.t1:exon:113MSAD_210100.t1:exon:113Medicago sativaexon
MSAD_210100.t1:exon:114MSAD_210100.t1:exon:114Medicago sativaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210100.t1:cdsMSAD_210100.t1:cdsMedicago sativaCDS


Synonyms
The feature 'MSAD_210100.t1' has the following synonyms
Synonym
maker-Scc4a34_26-augustus-gene-3.36-mRNA-1
Sequences
The following sequences are available for this feature:

mRNA sequence

>MSAD_210100.t1 ID=MSAD_210100.t1|Name=MSAD_210100.t1|organism=Medicago sativa|type=mRNA|length=876bp
CGCGTGGCGTGGCTACGATAAAACCAACGAAAACCCCAAACAAACAAACG
ATAGCAGAGAGAGAGAGAGTAGTGACAGTGAGTGAAGCGATCTCTCTAGA
ACTAGAACCATGAAAACTGTTACCTCCTCAATCCTCTTCTTCACATTTTG
CATAATCATTGTCTTCTCTCAATCATCAAGGATAATCCTCGATCACCCTC
AACCTAACCTATCTTTCAAACCCAATCAAACCCAACATCAGCAGAAGAAT
AATGAAGATATTAGTAACTCTTGTTCATACACTGTCACAATAACCACAAG
CTGCGATTCTCCCTCATATACTAGAGATCGTATCAGTCTTTCTTTTGGTG
ATGCTTATGGCTATCAGGTTTATGTTCCAAGATTGGATGATCCTAGCTCA
AGGACATTTGAACGGTGTTCTACAGATACATTTAACATAAACGGACCATG
TACATACCCGATATGCTATCTGTATTTATACAGGTCTGGATATGATGGTT
GGAAACCAGAGAGTGTGACAGTATATACCCATAACTACCAACCTGCTACT
TTTTACTACAACGCTTTTATCCCAAATGGTATTTGGTATGGTTTCGATTA
TTGTCGTGGTTACTTACCCTCCACTACCACTGCCACTGCTGCTGCTGCTG
CACTCTAGTGTAGTTGATCTTCTTAGTTTATGAATAAGATAATAATGTAG
TTTTCCATCTGTGAAACCCCTCTGTTATATGTGGGATTAGTGGTCCTTCT
ATAAGCCATTCTTCTATATGGAAATGTTTGTAGGTTTTACTGTCTGTGTT
AATTCCACATTATATATACCATGTGATATTTTGAGAGACTGTTTGGTCTT
GTCTATTTATGAAGTCTAGCTAAATT
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protein sequence of MSAD_210100.t1

>MSAD_210100.t1-protein ID=MSAD_210100.t1-protein|Name=MSAD_210100.t1|organism=Medicago sativa|type=polypeptide|length=183bp
MKTVTSSILFFTFCIIIVFSQSSRIILDHPQPNLSFKPNQTQHQQKNNED
ISNSCSYTVTITTSCDSPSYTRDRISLSFGDAYGYQVYVPRLDDPSSRTF
ERCSTDTFNINGPCTYPICYLYLYRSGYDGWKPESVTVYTHNYQPATFYY
NAFIPNGIWYGFDYCRGYLPSTTTATAAAAAL.
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mRNA from alignment at Scc4a34_26:344930..346487+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSAD_210100.t1 ID=MSAD_210100.t1|Name=MSAD_210100.t1|organism=Medicago sativa|type=mRNA|length=1558bp|location=Sequence derived from alignment at Scc4a34_26:344930..346487+ (Medicago sativa)
CGCGTGGCGTGGCTACGATAAAACCAACGAAAACCCCAAACAAACAAACG ATAGCAGAGAGAGAGAGAGTAGTGACAGTGAGTGAAGCGATCTCTCTAGA ACTAGAACCATGAAAACTGTTACCTCCTCAATCCTCTTCTTCACATTTTG CATAATCATTGTCTTCTCTCAATCATCAAGGATAATCCTCGATCACCCTC AACCTAACCTATCTTTCAAACCCAATCAAACCCAACATCAGGTACTATTT TTTCACTTTTTTTATTTTTTTATTTTTATAATAGTAGTAGATTTAATTAC TTAATTTGATTTCTAGAGAAGCATTTTCAGATCTTGTTATTGTTTTAGTA TAATAATATGAATGTTGTAGCAGAAGAATAATGAAGATATTAGTAACTCT TGTTCATACACTGTCACAATAACCACAAGCTGCGATTCTCCCTCATATAC TAGAGATCGTATCAGTCTTTCTTTTGGTGATGCTTATGGCTATCAGGTTT GTTCCATTTTTTTATGCTAAACTTAAATTAACCAATTCAGAAATTATTAG TGTATAACTAATTCACTCTAATTTTGTTACATTATTAAAAAAATGAGCCA AAACTAAATATTAGTCTTTAACTTAATATAAAGTTTCAAACATGTCATTT ATTTATTTATTTATTTATTTTTATCAAATTATTAGTCCTATATTTTATTT TAAAAAATGTTTACCTCATTAGTCCACTTTTTTACCATTGAATTGAATGG TATGGTATATACTGTAAAGAATGTTCCATTCCACCATTCAAATCCAAATT AGACTCTTGTTGACATTTACAACAATCAGATCACAATCTTAAATAAAAAA TTAAAACAAGGACAACTGTTTATGCGGTCTCTTAAGTTAATTTAGTCATT CACCTATGTTTCGACATGGATTACAAGCTTTTAATCTATTGTCTTCTTTC CATGTGAGCTCTCAGTACAAATAAGATACTTTGTAATTGATTGATGTTTC ATATCAATGAAATTTTATTAATATATTGGTTAATTGGATAATGAATCAGG TTTATGTTCCAAGATTGGATGATCCTAGCTCAAGGACATTTGAACGGTGT TCTACAGATACATTTAACATAAACGGACCATGTACATACCCGATATGCTA TCTGTATTTATACAGGTCTGGATATGATGGTTGGAAACCAGAGAGTGTGA CAGTATATACCCATAACTACCAACCTGCTACTTTTTACTACAACGCTTTT ATCCCAAATGGTATTTGGTATGGTTTCGATTATTGTCGTGGTTACTTACC CTCCACTACCACTGCCACTGCTGCTGCTGCTGCACTCTAGTGTAGTTGAT CTTCTTAGTTTATGAATAAGATAATAATGTAGTTTTCCATCTGTGAAACC CCTCTGTTATATGTGGGATTAGTGGTCCTTCTATAAGCCATTCTTCTATA TGGAAATGTTTGTAGGTTTTACTGTCTGTGTTAATTCCACATTATATATA CCATGTGATATTTTGAGAGACTGTTTGGTCTTGTCTATTTATGAAGTCTA GCTAAATT
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Coding sequence (CDS) from alignment at Scc4a34_26:344930..346487+

>MSAD_210100.t1 ID=MSAD_210100.t1|Name=MSAD_210100.t1|organism=Medicago sativa|type=CDS|length=549bp|location=Sequence derived from alignment at Scc4a34_26:344930..346487+ (Medicago sativa)
ATGAAAACTGTTACCTCCTCAATCCTCTTCTTCACATTTTGCATAATCAT
TGTCTTCTCTCAATCATCAAGGATAATCCTCGATCACCCTCAACCTAACC
TATCTTTCAAACCCAATCAAACCCAACATCAGCAGAAGAATAATGAAGAT
ATTAGTAACTCTTGTTCATACACTGTCACAATAACCACAAGCTGCGATTC
TCCCTCATATACTAGAGATCGTATCAGTCTTTCTTTTGGTGATGCTTATG
GCTATCAGGTTTATGTTCCAAGATTGGATGATCCTAGCTCAAGGACATTT
GAACGGTGTTCTACAGATACATTTAACATAAACGGACCATGTACATACCC
GATATGCTATCTGTATTTATACAGGTCTGGATATGATGGTTGGAAACCAG
AGAGTGTGACAGTATATACCCATAACTACCAACCTGCTACTTTTTACTAC
AACGCTTTTATCCCAAATGGTATTTGGTATGGTTTCGATTATTGTCGTGG
TTACTTACCCTCCACTACCACTGCCACTGCTGCTGCTGCTGCACTCTAG
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Properties
Property NameValue
NoteEmbryo-specific 3 MAKER:173.4:0.08:Medtr2g103670
AED0.08
QI109|1|1|1|1|1|3|218|182
eAED0.08
CADL Non-redundant FlagY
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene Ontology Update2017-11-12
Whole Genome Assembly and Annotation of Medicago sativa2016-01-05
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scc4a34_26supercontigScc4a34_26:344930..346487 +
Gene Ontology
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane