MSAD_210098.t1 (mRNA; Medicago sativa )

Overview
NameMSAD_210098.t1
Unique NameMSAD_210098.t1
TypemRNA
OrganismMedicago sativa (alfalfa)
Sequence length891
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MSAD_210098MSAD_210098Medicago sativagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210098.t1MSAD_210098.t1-proteinMedicago sativapolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210098.t1:exon:129MSAD_210098.t1:exon:129Medicago sativaexon
MSAD_210098.t1:exon:130MSAD_210098.t1:exon:130Medicago sativaexon
MSAD_210098.t1:exon:131MSAD_210098.t1:exon:131Medicago sativaexon
MSAD_210098.t1:exon:132MSAD_210098.t1:exon:132Medicago sativaexon
MSAD_210098.t1:exon:133MSAD_210098.t1:exon:133Medicago sativaexon
MSAD_210098.t1:exon:134MSAD_210098.t1:exon:134Medicago sativaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210098.t1:cdsMSAD_210098.t1:cdsMedicago sativaCDS


Synonyms
The feature 'MSAD_210098.t1' has the following synonyms
Synonym
maker-Scc4a34_26-augustus-gene-3.35-mRNA-1
Sequences
The following sequences are available for this feature:

mRNA sequence

>MSAD_210098.t1 ID=MSAD_210098.t1|Name=MSAD_210098.t1|organism=Medicago sativa|type=mRNA|length=891bp
ATGTCTTCAGAAGCTGGGTCTAGTAACAAACCTTGTAATTTGGAACAGGT
GATTTTTACAACTCCGGTGAGCAAGGTTGAGTTTGATATCAGAGAAAAAC
GGAATATGATCCTTGCGGTGCTTTTTGCCAACGCCGAGGGCAATATCCTC
ATCGAACGTTTTCATGGAGTTCCTGCAGAGGAGCGCCTACACTGGCGTTC
TTTCTTGGTCAAACTAGGAGCTGATAATCTTAAGGGTGTAAAAAATGAAG
AACTCCTAGTTGCTTGCCACAAGTCAGTCTATATTGTATACACAGTACTT
GGAGATGTCAGTATATACGTTGTGGGGAAGGACGCGTACGATGAACTTGC
TTTGTCGGAGGTTATCTTTACAATAACCTCAGCTGTAAAGGATGTATGTG
GGAAGCCCCCAACTGAGCGCCGTTTCCTTGATAAGTATGGAAGAATTTGC
TTGTGTTTGGATGAAATTGTATGGAAGGGATATCTGGAAAATACGGAAAA
AGATAGAATCAAGAGATTGATAAGGTTGAAGCCTCCTACTGAGTTTTGAA
TGAGAAATTCTGAGGCAGTCATTATAGAATCTGCAGTTTGAGTCGTGTGG
TGAGCATCTTGTGACTTAGAAATGGCATGTAACCAAAGCCAGGCAAACCT
CTTTGTATGATATTTTGTTCTCTAGAATGGTGCAGGCGAGGATTTTGCTC
GGCCCATAAATACTTGCATTAACATTTTCAATTTTTTTTAATGTTTTAAC
ATCTATATTGTTGATTTTGTTCTACATATACCTTGTGCAATGTGTTTATT
TTCACTCTTTTTTGGTCTGCTCTTCTAAGTATATATATATATATATTTTT
TTTTTTTTTTGACAAATGCTCTTCTAAGTATATGTTTGTTG
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protein sequence of MSAD_210098.t1

>MSAD_210098.t1-protein ID=MSAD_210098.t1-protein|Name=MSAD_210098.t1|organism=Medicago sativa|type=polypeptide|length=183bp
MSSEAGSSNKPCNLEQVIFTTPVSKVEFDIREKRNMILAVLFANAEGNIL
IERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYIVYTVL
GDVSIYVVGKDAYDELALSEVIFTITSAVKDVCGKPPTERRFLDKYGRIC
LCLDEIVWKGYLENTEKDRIKRLIRLKPPTEF.
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mRNA from alignment at Scc4a34_26:335065..341060+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSAD_210098.t1 ID=MSAD_210098.t1|Name=MSAD_210098.t1|organism=Medicago sativa|type=mRNA|length=5996bp|location=Sequence derived from alignment at Scc4a34_26:335065..341060+ (Medicago sativa)
ATGTCTTCAGAAGCTGGGTCTAGTAACAAACCTTGGTTAGCTTGTTAACC AAGGGAGTTAGTTTGTTAGAGGAGTTTGTTACAACGTCTAGTTGTATATA TACTCACTCATATGTTGTAAATAGAAGAGAATGTGTGTGAATCAATAAAA ATTTCTATTAGTTTTCTCTCTTTCAGTTTTACAAACAATTATGTTATTTC TCATCTTGCTTAAAACAACTTATTCTTCATAAGCACTTTTGCTGCGCAAA GAACATAGTGATTGTTCTAACAAGTTCAAGGCCTCTTCTGCATTAGCATG ATTTACCAAAATTTAAAGAATAAAATTAACTAATGTTAATTGATATGATT GATTTATTTTTGTTTTAATTTTTTCATTTCATGTGAGTGTATCTATATTA GAATTTCTCTATCCACTAGATCCATTATTGTCATTTTGTTTGTTGCGTCC ATATTATGTAGGTAATCCATCAAGCTAATGCAATGAATACATTATCAATT ATTTAACTGCTTTTATATGAATTATTTAATCATATATACTATATATATGA CATTTTTTTATTAGCAATCTCATAACTACATGAACCAAAATCTAAGTAGG TCATAATTAGAGAGACCTTTGACATAATTAAGTGTAATAAAATTTTGAAA AAGAAAATATATAAAGGGTATCTCAGTAATTTGGAACAGGTGATTTTTAC AACTCCGGTGAGCAAGGTTGAGTTTGATATCAGAGAAAAACGGAATATGA TCCTTGCGGTGCTTTTTGCCAACGCCGAGGGCAATATCCTCATCGAACGG TGAGTACACTCCGATCTCTCTCTGATCTATATATTCTAATTCAAAATTAA TTTCCTCATTTTATCATCTTTTTATTCATTTCATTTTTAATTTTCAGCGT TTTCTTTGATCTGGATTCTGTTTGAAATTTTGATTATATTGGTTTAGCTT GATTTTTAATAGGATTACACTAACACGCTTGTTATTTCCCTAAATCTTAA GTTGTTTTCATAACTTGATTCAGCTTATTTTCATAAGCTCTTCAAGATAG TTTGTCAAAACAGCTTATACCAAAACAATTCCACTTCATTTTATCTTTTG TTATTAAAACAGCTTATACATAAGCGCTTATCATGGTTAAGCTGCAAAAT AAGTTGTTTATCCGAGGAGATGTTATGTTTAGTAAGCTTCATACCTAAGA CTAATATGATAATAGCCTGGGAAATTAGAAAACCAGATTATACATGATAC ATTTTCTACTTTACATGATTTAAGTGAAATCTCACTCTCGACCCGCAATG GTAGCCCCTATCAGATAAAGCCTAGGTAAAGCGCACTAGACTTGGAGATT CGTGCATCCTCTCGGAGAGGGACAAACTCTCTCGCTTGTTAGTCAAGCTT TGAAGGTGCCGCGGCAATGTAAGCTGCAAGCTTAGGCTTTCTCCGGTCAG CTGATATAGACTCCCCATTTGCACTTCTTTGTAAGTTGTTGCTTTGCTTC CAAGAATAAGAATAGAGTTCCACTTAAGCTAAGTTGCGAAGTCGAACTGA ATCCGAATCTAAGTTCTCTCAGATAGGTGTTTAGTGATCTCGAGAATAAG TATAGTGATCTCGAGAAGAAGTTTTGCTTCTTCTTGTCAAATGTAAGAAA CATTCAAACACAAACCAAGGTATTTTATTAAAGCTTCTGATTTCTCTTTA ATCAGATTGAGGGGTTCAGCCCGTTCATTTCTAGTGTTTCATGTTTCAAT TTCCAGTGATACAATAAATATCAGAGAATACACTATGGAATTTTTTTTTT TGTTTTGAAAACTCGGCAACATTATGGAAAATTTTAAAAAATGCATTTTA AAAATAGTTTGAATAATTTTGTAAATTTTCAAAATAATGTTTCCAGTGTT TCTGAAAATGCATTCTCCCTAGGTAGTTTCTATCTTTTCTCTATCGCAAT TAAAAGGGAAAATCAAAATCCATATCACATGTAGGGGTGTAAGCGGTTCG GACTAAACCAATGAAACCGATAGTCTAAACCGGACCAAACCGAAAAAATA TCCGACCTTGTTTGGTTCGGTTTGAAACCGATCCGAACCAATTGAAACCA GTCTAGTTTGGTTTGGTTCATGGTTTTTCATTTTGAGATCCGTGAAACCG ATGAACCAATCCGATGATAACCACACTCCTTACTTTACTAATATTATCCT ACCTCACACAAACTTATGGTTAGACTCAAAATTAAAGTCCAACATAAAAT ACTGTTTAATACATTCACTTTCTCTCATCTTGGATTTAGTTTGGATGTTT TTTTTAATTTCATGGAGAGCATAATTTCATGATGTTTAAATTTCAGGATG TTTTAATTTCAGTTTGCATGGATTTGTTATTTTGACTATGTTTTAATTTT GGGATGTTCTTTTTGGAAGTTTTGTGTTTGTTGATGAATGATGCATGTAT GGATCATGGATGATTGAAATATTTGAGTTTGATGAAGTTGTTTTTAAAGA ATGATTGATGAATGAATCTTGGATCATATGTATGAAATATTGAGTAAGAT TATTTATAAAAAGTTGTTTGAAAAATAGAGAACATGAAAAAACAAAATAT GAAATACAATTATACAAAGTTGTATGAAATATTTTCTAAGAATATGAACT TTTTTATTGTATTTTGTAACAAACCGATCAACCGAACCAATCCAAACCGA ACCAAACCGATTAGTTTGGTTCGGTTTCTTTTTTGAAAAACAGTGGAAAC CGAACCAAACCGAACCGATGAAGGTTTCATCGGTTCGGACATTTTTTTGA CAGAAAACCAATCCAAACCGAACCGTTACACCCCTAATCACATGTCATTC CAGCCACTCACATACAAAGTAAAATTGAAAATGTTGTTAGAAAGTAAATG GACTTGGAACTTTTTCTTGTGTGGTTTTTCTTTCGTCAACCTGCATTGTA GAAGATACTTGGTTCCAACTTTTTGATTATCAAAACTGAGTGGATTTGTT ATGATTGCAGTTTTCATGGAGTTCCTGCAGAGGAGCGCCTACACTGGCGT TCTTTCTTGGTCAAACTAGGAGCTGATAATCTTAAGGGTGTAAAAAATGA AGAACTCCTAGTTGCTTGCCACAAGTAAGTATACTGCTCTCGCCTCTCTC AAGTCATGTGTACGTGATGTATGAATGTGTATCTTACATGGATAAATTAC CTTATCTAGGTGAGCACTTTAACTTTATCTGATTCTGAACTGGTCCAAGG ACTAAATTTTAGTTATTAGAATTCTATTTGCAAGGTTAGTGGGCCGTTGA AATCTGTTTATATGAATGATTATCGATTCAGTGCTATGATAGTGATAGAC TTTGCACAGTTTGCATTTTGAATTTTTGTGATGCAAGTAGATGAGAACAA AGTGAATAACATTAGTTGATTACTAAGATATTTCAAATAGTATTATCATT AATGAAAAATTTGGAAAAGAGTTGTGGAAATGGAAGCTAAAAACTGACAT GTGAACTTGTCCCATCAAAAATCAGTAACAGATACAAGATTGTGGAATAA AAGAAAAACTTTTTTGCTTCACTGCTAAATGCTAATTATTGTTCATTAAT ATGCCTTCATTTTTGAAAATTATGTCTCATTCATATGTGATGATTCAGTT TCCCTTTTAGTAAACAGTGATTTATTATTTTACTTCTACTTCTTATCTTT ATCAGGTCAGTCTATATTGTATACACAGTACTTGGAGATGTCAGTATATA CGTTGTGGGGAAGGACGCGTACGATGAACTTGCTTGTATGTATTCTATGA ACCAATCTTTTTTATTTGATGACAGTAAATGGTAAAATAAAAGCAAACAA ATTACTCATCTCAGTTGTTGATGTTTTAATATAAAATTGCACAATATTTT GTACTTGCTGATAGTAAAATAAAACATATAAATCAATCATCTAAGTTGTT GATGCTTGAAAGTTGATTTGCTTGCTATTTTTAGATTGAATTTTGATAAC AACCCTGTATCCTATTAGAAATAAATAGGGACAAACCCCAATTACAAAGA TAGAATACTACAGAACTTCGGAGTCTTCATCTGCTTATACCCAAAGTCCC CAATTCTCTCTTAAATAACAAGATATCACTCCCTCTCGACCACTCTTGTT ATTTATAGGCAACATCTTTATTTCTTCTATTTATCTCAACCCAACTACCT AACCTTGTTACCAACAGCCCTTTCATCAACAATGTAGGTTCTACATTATT TGCGTGTCCTTGTCTGCAGTTCTGATTATTGGATCTCATCTTTTAGACAT CAATTCTACCTCCTGATGTGTTGATTATATTTTGTTGGCTAATCAACCAA GTTTGATTCTTCTCTGTTATTGTTGTGCCTAGCACCTGTGGCTTTGCTTC TCCTCATGCTGTCAATTGGGTTCCCTAGAATCTTGTCCATCCTGCACAAT ATTTCCCATACCATAAAACTAGCGTCCATCCACAACTGTTGCTCTGTTTC CTTTTCGATCTATTGCCTTAATTTTTGCAAGCTTCTCTTTGTAGCATCCC CTCAATCCACCAGTCTCGTTTAGCAATGAATTGCTCCCTAGAAAAGATGA TAAACTAGCTATTAAAGGATACTCTTGCGGTGTTGAAAATATGGCATTGC ATCTTAAATAATGTAGTGAGAAAAGCTAGCTATCAGGTGAACTAGTAGGG GTATATCTTAGAATCTAACTAAACTTAGCAGACAATTTTGTCTGACTTTC CAAGAATAGTATACATATTTAATCAAAAAACAAGGTTGTTCGTTCATATT GTGATTTGATGGTATCAACATTCATAACTATGCCAATTGCCGAGTGACTC AAGCATATTGTTATTTCACCAAGGGTTTGAAATTGCAATTTGGAAAAACC TATATGTTCGTAAGCTGTCAAGAACTTTCATAATTTTACATTGATAGTAC TAATTTACAAATGTTTTGTTTTTCTCCAGTGTCGGAGGTTATCTTTACAA TAACCTCAGCTGTAAAGGATGTATGTGGGAAGCCCCCAACTGAGCGCCGT TTCCTTGATAAGTATGGAAGAATTTGCTTGTGTTTGGATGAAATTGTATG GAAGGTGAGAAGACATGCCGGACAATGTTTAGTAAAAGATCACAGCTCGC TTTTGAAAATTTTCAGTTTACCCATTCATTTTACTTACCTTAGAGAAACA TCATTTTATGACATTCACAATTGTATATGCATCTATCTAGTTATTATAAA TATTGTTATTTGCTGTTTAATTATTTTTCACAAGACTCATTACGTATTCA CGTCAGTGATTATCTTTTGCTACTCAATTCACTTGAAACGATACTCCGTC TTATTTGAATAAATTTAAACTGAAGCAAATATCAAAATGCTACTAAAAAT AGACAAGTTTTCCCCATATTTTCATGCAAAACTTGGTTGCGACTTTTTGT CTCTGTTCACTACACACACTACTGATCCAATCTGTATCTTTTTGCATCTT ATGTACTCCTCTGTTCCGTTGTTGCGAAAGAGGAGTTTCTTCTTGATGTT GTGCTTACATTTTCCCTGTATTTCTTTTGAAGGGATATCTGGAAAATACG GAAAAAGATAGAATCAAGAGATTGATAAGGTTGAAGCCTCCTACTGAGTT TTGAATGAGAAATTCTGAGGCAGTCATTATAGAATCTGCAGTTTGAGTCG TGTGGTGAGCATCTTGTGACTTAGAAATGGCATGTAACCAAAGCCAGGCA AACCTCTTTGTATGATATTTTGTTCTCTAGAATGGTGCAGGCGAGGATTT TGCTCGGCCCATAAATACTTGCATTAACATTTTCAATTTTTTTTAATGTT TTAACATCTATATTGTTGATTTTGTTCTACATATACCTTGTGCAATGTGT TTATTTTCACTCTTTTTTGGTCTGCTCTTCTAAGTATATATATATATATA TTTTTTTTTTTTTTTGACAAATGCTCTTCTAAGTATATGTTTGTTG
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Coding sequence (CDS) from alignment at Scc4a34_26:335065..341060+

>MSAD_210098.t1 ID=MSAD_210098.t1|Name=MSAD_210098.t1|organism=Medicago sativa|type=CDS|length=549bp|location=Sequence derived from alignment at Scc4a34_26:335065..341060+ (Medicago sativa)
ATGTCTTCAGAAGCTGGGTCTAGTAACAAACCTTGTAATTTGGAACAGGT
GATTTTTACAACTCCGGTGAGCAAGGTTGAGTTTGATATCAGAGAAAAAC
GGAATATGATCCTTGCGGTGCTTTTTGCCAACGCCGAGGGCAATATCCTC
ATCGAACGTTTTCATGGAGTTCCTGCAGAGGAGCGCCTACACTGGCGTTC
TTTCTTGGTCAAACTAGGAGCTGATAATCTTAAGGGTGTAAAAAATGAAG
AACTCCTAGTTGCTTGCCACAAGTCAGTCTATATTGTATACACAGTACTT
GGAGATGTCAGTATATACGTTGTGGGGAAGGACGCGTACGATGAACTTGC
TTTGTCGGAGGTTATCTTTACAATAACCTCAGCTGTAAAGGATGTATGTG
GGAAGCCCCCAACTGAGCGCCGTTTCCTTGATAAGTATGGAAGAATTTGC
TTGTGTTTGGATGAAATTGTATGGAAGGGATATCTGGAAAATACGGAAAA
AGATAGAATCAAGAGATTGATAAGGTTGAAGCCTCCTACTGAGTTTTGA
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Properties
Property NameValue
NoteClathrin adaptor complex small chain MAKER:28.1:0.2:Medtr2g103690
AED0.20
QI0|0.8|0.66|0.83|0.8|0.66|6|342|182
eAED0.20
CADL Non-redundant FlagY
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene Ontology Update2017-11-12
Whole Genome Assembly and Annotation of Medicago sativa2016-01-05
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scc4a34_26supercontigScc4a34_26:335065..341060 +
Gene Ontology
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport