MSAD_210009.t1 (mRNA; Medicago sativa )

Overview
NameMSAD_210009.t1
Unique NameMSAD_210009.t1
TypemRNA
OrganismMedicago sativa (alfalfa)
Sequence length483
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MSAD_210009MSAD_210009Medicago sativagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210009.t1MSAD_210009.t1-proteinMedicago sativapolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210009.t1:exon:0MSAD_210009.t1:exon:0Medicago sativaexon
MSAD_210009.t1:exon:1MSAD_210009.t1:exon:1Medicago sativaexon
MSAD_210009.t1:exon:2MSAD_210009.t1:exon:2Medicago sativaexon
MSAD_210009.t1:exon:3MSAD_210009.t1:exon:3Medicago sativaexon
MSAD_210009.t1:exon:4MSAD_210009.t1:exon:4Medicago sativaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210009.t1:cdsMSAD_210009.t1:cdsMedicago sativaCDS


Synonyms
The feature 'MSAD_210009.t1' has the following synonyms
Synonym
maker-Scc4a34_9-snap-gene-0.2-mRNA-1
Sequences
The following sequences are available for this feature:

mRNA sequence

>MSAD_210009.t1 ID=MSAD_210009.t1|Name=MSAD_210009.t1|organism=Medicago sativa|type=mRNA|length=483bp
atgcttcgattcgataaggctaggccactttatgccctttttagtgaaag
aaaaaggtcaaaaacgaatatgctcgttagatttcctaggaactattaca
tgcttcgattcgataaggctaggccactttatgccctttttagtgaaaga
aaaagggtcaaaaacgagaactattacatgcttcgattcgataaggctag
gccactttatgccctttttagtgaaagaaaaaggtcaaaaacgaatatgc
tcgttagatttcctaggaactattacatgcttcgattcgataaggctagg
ccactttatgccctttttagtgaaagaaaaaggtcaaaaacgatcgtaga
tatgctcgttagatttcctaggaactattacatgcttcgattcgataagg
ctaggccactttatgccctttttagtgaaagaaaaaggtcaaaaacgagt
aaaatccgtaaattaacaaggaaattcacttaa
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protein sequence of MSAD_210009.t1

>MSAD_210009.t1-protein ID=MSAD_210009.t1-protein|Name=MSAD_210009.t1|organism=Medicago sativa|type=polypeptide|length=161bp
MLRFDKARPLYALFSERKRSKTNMLVRFPRNYYMLRFDKARPLYALFSER
KRVKNENYYMLRFDKARPLYALFSERKRSKTNMLVRFPRNYYMLRFDKAR
PLYALFSERKRSKTIVDMLVRFPRNYYMLRFDKARPLYALFSERKRSKTS
KIRKLTRKFT.
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mRNA from alignment at Scc4a34_9:16..856+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSAD_210009.t1 ID=MSAD_210009.t1|Name=MSAD_210009.t1|organism=Medicago sativa|type=mRNA|length=841bp|location=Sequence derived from alignment at Scc4a34_9:16..856+ (Medicago sativa)
atgcttcgattcgataaggctaggccactttatgccctttttagtgaaag aaaaaggtcaaaaacgagtaaaatccgtaaattaacaaggaaattcactt aaccccattttggccgtttttgaaaattctaaaatcaaccatggaagtcg tagatatgctcgttagatttcctaggaactattacatgcttcgattcgat aaggctaggccactttatgccctttttagtgaaagaaaaagggtcaaaaa cgagtaaaatccgtaaattaacaaggaaattcactaacccccattttggc ctttttgaaaattctaaaatcaaccatggaagtcgtagatatgctcgtta gatttcctaggaactattacatgcttcgattcgataaggctaggccactt tatgccctttttagtgaaagaaaaaggtcaaaaacgagtaaaatccgtaa attaacaaggaaattcacttaaccccattttggccgtttttgaaaattct aaaatcaaccatggaagtcgtagatatgctcgttagatttcctaggaact attacatgcttcgattcgataaggctaggccactttatgccctttttagt gaaagaaaaaggtcaaaaacgagtaaaatccgtaaattaacaaggaaatt cattaaccccattttggccgtttttgaaaattctaaaatcaaccatggaa gtcgtagatatgctcgttagatttcctaggaactattacatgcttcgatt cgataaggctaggccactttatgccctttttagtgaaagaaaaaggtcaa aaacgagtaaaatccgtaaattaacaaggaaattcacttaa
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Coding sequence (CDS) from alignment at Scc4a34_9:16..856+

>MSAD_210009.t1 ID=MSAD_210009.t1|Name=MSAD_210009.t1|organism=Medicago sativa|type=CDS|length=483bp|location=Sequence derived from alignment at Scc4a34_9:16..856+ (Medicago sativa)
atgcttcgattcgataaggctaggccactttatgccctttttagtgaaag
aaaaaggtcaaaaacgaatatgctcgttagatttcctaggaactattaca
tgcttcgattcgataaggctaggccactttatgccctttttagtgaaaga
aaaagggtcaaaaacgagaactattacatgcttcgattcgataaggctag
gccactttatgccctttttagtgaaagaaaaaggtcaaaaacgaatatgc
tcgttagatttcctaggaactattacatgcttcgattcgataaggctagg
ccactttatgccctttttagtgaaagaaaaaggtcaaaaacgatcgtaga
tatgctcgttagatttcctaggaactattacatgcttcgattcgataagg
ctaggccactttatgccctttttagtgaaagaaaaaggtcaaaaacgagt
aaaatccgtaaattaacaaggaaattcacttaa
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Properties
Property NameValue
NoteUncharacterized protein MAKER:0.0:0.45:Medtr2g084470
AED0.45
QI0|0|0|1|0|0|5|0|160
eAED0.50
CADL Non-redundant FlagN
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Medicago sativa2016-01-05
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scc4a34_9supercontigScc4a34_9:16..856 +