MSAD_210005.t1 (mRNA; Medicago sativa )

Overview
NameMSAD_210005.t1
Unique NameMSAD_210005.t1
TypemRNA
OrganismMedicago sativa (alfalfa)
Sequence length1158
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MSAD_210005MSAD_210005Medicago sativagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210005.t1MSAD_210005.t1-proteinMedicago sativapolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210005.t1:exon:0MSAD_210005.t1:exon:0Medicago sativaexon
MSAD_210005.t1:exon:1MSAD_210005.t1:exon:1Medicago sativaexon
MSAD_210005.t1:exon:2MSAD_210005.t1:exon:2Medicago sativaexon
MSAD_210005.t1:exon:3MSAD_210005.t1:exon:3Medicago sativaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210005.t1:cdsMSAD_210005.t1:cdsMedicago sativaCDS


Synonyms
The feature 'MSAD_210005.t1' has the following synonyms
Synonym
maker-Scc4a34_6-augustus-gene-0.9-mRNA-1
Sequences
The following sequences are available for this feature:

mRNA sequence

>MSAD_210005.t1 ID=MSAD_210005.t1|Name=MSAD_210005.t1|organism=Medicago sativa|type=mRNA|length=1158bp
gcagtaataattttggcttgtttaacccttgcagtggttgactcgacgac
aagcacacttagtgcgtgcccaacagggtatccctctgtctgaatacggg
attttggtcgatatgattcgcgtgcctgattgggcatttgaagctgcagg
tcaagaaacaaggggcatgggccaagatactgcttcatatcatccaggac
tttacctaacaccggctcagagagaagcagtcgaagctttaattcaggaa
ctcccaaagttcaggttgaaggctgttcctactgattgcagtgaatgccc
catctgcttagaagagttccgtgttgggaatgaggttcgtggcttgcctt
gtgcacacaattttcatgttgaatgcattgacgagtggcttaggctgaat
gtgaagtgtcctaggtgccgttgctcagtgtttccaaatcttgatcttag
tgccctgtccaatctccgtcctgattctgaacgatcttctgccagtgttg
tgacaacaactagatacgttagaggccaaccttctagtcaaagttacttg
ttaaggttacaggggcttctccgccctgtgcgtgctgaaattgcagggcc
agttgatgacacagataatgctttgcaaaatgctgagaacggtgttgcac
ctgttttgacacaaaatgcaccaaacagagtccagggctcaacggtggaa
tgcatgcctgtcagtctttcttctgcacaaagttagattatgtagtttta
agctttgactagaataggttaaagaatgcacatccacatctgggctgtaa
aaaaatggttcacattctaacatgaaatttttacattgatccatgaagaa
atgggtcagtttctttgtccggggcttcttcaagtggcgcagtaggactt
ggaaaatcaaggtatacctttttgctttactaacctagatcagaactgca
gatctgtaattgtctttttttcttttttccttctagccttttatgtttga
tcaagtgtaaaaagagtttgaaattctaatcagatggagtatgtgttcct
ttacctgttccattttgttgggcgtagtattactaatactattttattgg
gagagggtgatataggcgtagtttttttatttttctttctaaatgagttt
gtaggtga
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protein sequence of MSAD_210005.t1

>MSAD_210005.t1-protein ID=MSAD_210005.t1-protein|Name=MSAD_210005.t1|organism=Medicago sativa|type=polypeptide|length=208bp
MIRVPDWAFEAAGQETRGMGQDTASYHPGLYLTPAQREAVEALIQELPKF
RLKAVPTDCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRLNVKCP
RCRCSVFPNLDLSALSNLRPDSERSSASVVTTTRYVRGQPSSQSYLLRLQ
GLLRPVRAEIAGPVDDTDNALQNAENGVAPVLTQNAPNRVQGSTVECMPV
SLSSAQS.
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mRNA from alignment at Scc4a34_6:10743..13377+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSAD_210005.t1 ID=MSAD_210005.t1|Name=MSAD_210005.t1|organism=Medicago sativa|type=mRNA|length=2635bp|location=Sequence derived from alignment at Scc4a34_6:10743..13377+ (Medicago sativa)
gcagtaataattttggcttgtttaacccttgcagtggttgactcgacgac
aagcacacttagtgcgtgcccaacagggtatccctctgtctgaatacggg
gtaagatttgccttcattgcaatataattagctgtttagttacatatctt
gtgaaaactgttttttttatagcagtatttctaataatgtccttaaaaca
tggatttttcccccataattgtccccctataaagaaaagggcagggagta
ggacagtattttaagttctatcttgaatccgtaactggtgcagtactgca
gtcaatcattattcatttgttaacattggcataaacttgtaatctgacga
catggtatgaagcttgcttttcagctggtgccatgcatctgataccggat
aatacacttttagatatgggtataattctttttaacatattagtctgttt
tgattttgtttaccatacatgtttccattttatgaagttaaaaactagca
atccctgcaaactgcatgttggattgcttggaatgtgatagattattatg
tttaaacaaatttttcgtgattatataatgattatatttacttttcaccg
tcagtagctggtttttatctgttctgcataataacaaggttctagggcac
atatgttatgggcacagtcccatgtatgtcatgtgggttgtaagtcttcc
gccttcctcaagacatttatttttcatcagaggaaatctgtttcgaagct
catactgttggattctttctggaggcatcacaatcagtattgctttatct
tatttcagagattgtacatatggggttgattgaatcattgaagcataatt
tgtgatcatattcttagcattctcaatgtatattcatttctgtttgatta
tccacactacaacaattagatggtaacagttgctatttttcgttttgtta
gattttggtcgatatgattcgcgtgcctgattgggcatttgaagctgcag
gtcaagaaacaaggggcatgggccaagatactgcttcatatcatccagga
ctttacctaacaccggctcaggtagttttagttgatgtttgcggacttgt
tgatttcatattagaactcatgcaaagcagcagaatgtttttctttgaaa
agtagagtgaactgtattgtcatgtagattaattagctgcgaaatatttt
gccttaattatgtagagggagaggaagacctaagaaaaccattagagaaa
accattagaaaagatttagaggtcaatgaattggatccaaatatgatctt
tgatagaacactatggcgtcatttgatccatgtagccgaccccacttagt
gggataaggcttgttgttgttgttgttgttgttgtatgctattattcata
tggttgtgttttcagacaatatgtttgctgttgttatgccatatatttat
ctcaatcaaattccttttgtatatttatattcaatttcagtgctgataat
aaggtttcatgtctgggttggatgcagagagaagcagtcgaagctttaat
tcaggaactcccaaagttcaggttgaaggctgttcctactgattgcagtg
aatgccccatctgcttagaagagttccgtgttgggaatgaggtatacttt
tctaaatccaattaaaggtctagagcaagtcatactaattaccatgtgct
gtttgccatctgatactgaaaataattctccatttaacctcgagaactct
ttacgttaaagatgtaatgtgtatcttcaagtgatttaaaaatagtccca
ctgtaatgcaggttcgtggcttgccttgtgcacacaattttcatgttgaa
tgcattgacgagtggcttaggctgaatgtgaagtgtcctaggtgccgttg
ctcagtgtttccaaatcttgatcttagtgccctgtccaatctccgtcctg
attctgaacgatcttctgccagtgttgtgacaacaactagatacgttaga
ggccaaccttctagtcaaagttacttgttaaggttacaggggcttctccg
ccctgtgcgtgctgaaattgcagggccagttgatgacacagataatgctt
tgcaaaatgctgagaacggtgttgcacctgttttgacacaaaatgcacca
aacagagtccagggctcaacggtggaatgcatgcctgtcagtctttcttc
tgcacaaagttagattatgtagttttaagctttgactagaataggttaaa
gaatgcacatccacatctgggctgtaaaaaaatggttcacattctaacat
gaaatttttacattgatccatgaagaaatgggtcagtttctttgtccggg
gcttcttcaagtggcgcagtaggacttggaaaatcaaggtataccttttt
gctttactaacctagatcagaactgcagatctgtaattgtctttttttct
tttttccttctagccttttatgtttgatcaagtgtaaaaagagtttgaaa
ttctaatcagatggagtatgtgttcctttacctgttccattttgttgggc
gtagtattactaatactattttattgggagagggtgatataggcgtagtt
tttttatttttctttctaaatgagtttgtaggtga
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Coding sequence (CDS) from alignment at Scc4a34_6:10743..13377+

>MSAD_210005.t1 ID=MSAD_210005.t1|Name=MSAD_210005.t1|organism=Medicago sativa|type=CDS|length=624bp|location=Sequence derived from alignment at Scc4a34_6:10743..13377+ (Medicago sativa)
atgattcgcgtgcctgattgggcatttgaagctgcaggtcaagaaacaag
gggcatgggccaagatactgcttcatatcatccaggactttacctaacac
cggctcagagagaagcagtcgaagctttaattcaggaactcccaaagttc
aggttgaaggctgttcctactgattgcagtgaatgccccatctgcttaga
agagttccgtgttgggaatgaggttcgtggcttgccttgtgcacacaatt
ttcatgttgaatgcattgacgagtggcttaggctgaatgtgaagtgtcct
aggtgccgttgctcagtgtttccaaatcttgatcttagtgccctgtccaa
tctccgtcctgattctgaacgatcttctgccagtgttgtgacaacaacta
gatacgttagaggccaaccttctagtcaaagttacttgttaaggttacag
gggcttctccgccctgtgcgtgctgaaattgcagggccagttgatgacac
agataatgctttgcaaaatgctgagaacggtgttgcacctgttttgacac
aaaatgcaccaaacagagtccagggctcaacggtggaatgcatgcctgtc
agtctttcttctgcacaaagttag
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Properties
Property NameValue
NoteRING-finger ubiquitin ligase MAKER:10.3:0.06:Medtr4g106960
AED0.06
QI112|1|1|1|1|1|4|422|207
eAED0.06
CADL Non-redundant FlagY
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene Ontology Update2017-11-12
Whole Genome Assembly and Annotation of Medicago sativa2016-01-05
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scc4a34_6supercontigScc4a34_6:10743..13377 +
Gene Ontology
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016874 ligase activity
molecular_function GO:0008270 zinc ion binding