MSAD_210004.t1 (mRNA; Medicago sativa )

Overview
NameMSAD_210004.t1
Unique NameMSAD_210004.t1
TypemRNA
OrganismMedicago sativa (alfalfa)
Sequence length624
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MSAD_210004MSAD_210004Medicago sativagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210004.t1MSAD_210004.t1-proteinMedicago sativapolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210004.t1:exon:4MSAD_210004.t1:exon:4Medicago sativaexon
MSAD_210004.t1:exon:5MSAD_210004.t1:exon:5Medicago sativaexon
MSAD_210004.t1:exon:6MSAD_210004.t1:exon:6Medicago sativaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210004.t1:cdsMSAD_210004.t1:cdsMedicago sativaCDS


Synonyms
The feature 'MSAD_210004.t1' has the following synonyms
Synonym
maker-Scc4a34_6-augustus-gene-0.8-mRNA-1
Sequences
The following sequences are available for this feature:

mRNA sequence

>MSAD_210004.t1 ID=MSAD_210004.t1|Name=MSAD_210004.t1|organism=Medicago sativa|type=mRNA|length=624bp
atgcctccaccacgcttaaaaccagtactatttgtgagtcggaaatcaga
gtttagagtatgggatgataaacaccacccgtggaaaacctctgtggata
atggtttatctgatagagggaagaaacagagtatcagagctgcttttgat
ttgaaagaaatggatatatgcatcagatggtatatctacaaaataaaacc
tcctcccattgatgacggaactccaaatgagagtgttgcagatgtttttg
ttcgtgtgacccaactcatgtcaatccttgaaactcaatacgctggtgac
acagtcgttatagtctcgccagattcggataacttgtcaatccttcaggc
tggtttggtaggcctagacttgcgaaggcacagggagttgtcttttgcac
ctggtgaagttcgccaggttgataccaatgacattcctacttacaagatg
cctccatctgctgtatataaatgctccagctaccaattgtaattagctct
tttattccttcaccttatataccaataaatggacatgtatagctcaagtt
tgtacatctgtgtttttaatatttattgtaatactttcctgacagaaaat
aaaattgttattatgttgattaaa
back to top

protein sequence of MSAD_210004.t1

>MSAD_210004.t1-protein ID=MSAD_210004.t1-protein|Name=MSAD_210004.t1|organism=Medicago sativa|type=polypeptide|length=164bp
MPPPRLKPVLFVSRKSEFRVWDDKHHPWKTSVDNGLSDRGKKQSIRAAFD
LKEMDICIRWYIYKIKPPPIDDGTPNESVADVFVRVTQLMSILETQYAGD
TVVIVSPDSDNLSILQAGLVGLDLRRHRELSFAPGEVRQVDTNDIPTYKM
PPSAVYKCSSYQL.
back to top

mRNA from alignment at Scc4a34_6:3767..5332+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSAD_210004.t1 ID=MSAD_210004.t1|Name=MSAD_210004.t1|organism=Medicago sativa|type=mRNA|length=1566bp|location=Sequence derived from alignment at Scc4a34_6:3767..5332+ (Medicago sativa)
atgcctccaccacgcttaaaaccagtactatttgtgagtcggaaatcaga
gtttagagtatgggatgataaacaccacccgtggaaaacctctgtggata
atggtttatctgatagagggaagaaacagagtatcagagctgcttttgat
ttgaaagaaatgggtgcttgtgataataattgttggatttggcctgctat
tactcagagagcttatcaaactctgaattattgcttctgttaattctatt
actagaaggttgttatgttggtttttttagttgttcttgttaatattgat
gatgtgttttctggttttaattttgggattgtgaattgtttgatttcagt
tatattgttccggaatacagctttcttgatgccggggattaggtgcttat
gaaggaaaaactttagaatatgtttcagaagtaagattctcactccatgt
actgttttatttactttagctatgttatatgatgacttctagttgaaaaa
tgtctcatgcagactgtagtaggttgattcttgaaaattatccgaaactc
taataataattgttgtcggtcctcctaacaagaatctcatgtattactcg
tcctggttactaagaaggtgatttaattggtgttggtttgacaaaaaaag
aattttaatgtcttgagttgaaactcaactcaagttcatatctgttttct
ttgtttttgtcgaatcaacattgatcagatcaccatcttattcataagaa
actacggacacgagaaccttgaacttctacttaaaaatgggaatgttgat
cattgtcaaaattttaagcgattttcaagatcagtgcactatagatcgca
tgcatgtaacactttcacactctagcttatatatgtatttcattacaaat
acgattacaatttcactatgttgtggagctaagcataaattttgcaatga
gattaaaaatgtgtaatggtggtgcagatatatgcatcagatggtatatc
tacaaaataaaacctcctcccattgatgacggaactccaaatgagagtgt
tgcagatgtttttgttcgtgtgacccaactcatgtcaatccttgaaactc
aatacgctggtgacacagtcgttatagtctcgccagattcggataacttg
tcaatccttcaggctggtttggtaggcctagacttgcgaaggtaactaac
caactaactagatactccaacctcaaccaaccaaagcctctgcaattata
tatatgagtttaattttaattctgtatcacattcattttgtttcttattt
acaagtgtctcaaattcaggcacagggagttgtcttttgcacctggtgaa
gttcgccaggttgataccaatgacattcctacttacaagatgcctccatc
tgctgtatataaatgctccagctaccaattgtaattagctcttttattcc
ttcaccttatataccaataaatggacatgtatagctcaagtttgtacatc
tgtgtttttaatatttattgtaatactttcctgacagaaaataaaattgt
tattatgttgattaaa
back to top

Coding sequence (CDS) from alignment at Scc4a34_6:3767..5332+

>MSAD_210004.t1 ID=MSAD_210004.t1|Name=MSAD_210004.t1|organism=Medicago sativa|type=CDS|length=492bp|location=Sequence derived from alignment at Scc4a34_6:3767..5332+ (Medicago sativa)
atgcctccaccacgcttaaaaccagtactatttgtgagtcggaaatcaga
gtttagagtatgggatgataaacaccacccgtggaaaacctctgtggata
atggtttatctgatagagggaagaaacagagtatcagagctgcttttgat
ttgaaagaaatggatatatgcatcagatggtatatctacaaaataaaacc
tcctcccattgatgacggaactccaaatgagagtgttgcagatgtttttg
ttcgtgtgacccaactcatgtcaatccttgaaactcaatacgctggtgac
acagtcgttatagtctcgccagattcggataacttgtcaatccttcaggc
tggtttggtaggcctagacttgcgaaggcacagggagttgtcttttgcac
ctggtgaagttcgccaggttgataccaatgacattcctacttacaagatg
cctccatctgctgtatataaatgctccagctaccaattgtaa
back to top
Properties
Property NameValue
NotePhosphoglycerate mutase MAKER:12.5:0.18:Medtr4g106970
AED0.18
QI0|0.5|0.66|1|1|1|3|132|163
eAED0.18
CADL Non-redundant FlagN
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Medicago sativa2016-01-05
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scc4a34_6supercontigScc4a34_6:3767..5332 +